Add sci-libs/itk-4.4.2 from science overlay

diff --git a/sci-libs/itk/ChangeLog b/sci-libs/itk/ChangeLog
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index 0000000..6186188
--- /dev/null
+++ b/sci-libs/itk/ChangeLog
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+# ChangeLog for sci-libs/itk
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*itk-4.4.2 (12 Sep 2013)
+
+  12 Sep 2013; Sébastien Fabbro <bicatali@gentoo.org> +itk-4.4.2.ebuild,
+  -files/itk-4.4-v3compat_I2VI_const-fix.patch, -itk-4.4.0.ebuild, metadata.xml:
+  sci-libs/itk: Version bump. Cleaned-up ebuild and metadata.xml

diff --git a/sci-libs/itk/Manifest b/sci-libs/itk/Manifest
new file mode 100644 (file)
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+++ b/sci-libs/itk/Manifest
@@ -0,0 +1,4 @@
+DIST InsightToolkit-4.4.2.tar.gz 231905134 SHA256 071a7929c295b80bc8a6ab80d50c06cdfb0e6aafd936103c6d0a4a086cf8bec3 SHA512 c65beca4dd60aa769871bb3089cbb421729a2dcbd8bd3ec42c378ed60828e4327f1faf062f77bcca34306315a1daee6bc29d858dab9aea1c08f4843405fd21e3 WHIRLPOOL 4036bce61d0900ef2f1484ca06e9b513f6154c2233122e41fe694c648dd6eef53510749bf75368f9851a4dbd45777ca7033ad43f28c86259d5efae9e0d4200bd
+EBUILD itk-4.4.2.ebuild 2923 SHA256 7f796a40419610c103d7df2cb2bddb34d1e0876cb5c255fbdcb2408823a27a69 SHA512 f915962b924ff2b3ff0e7d260469f7bd2f25ee958fde1e9df02487cb0ffafef872fd6c6212758ff3c337e674e6621bff18a3f9dfa2558c103405d69ef1dd0c07 WHIRLPOOL 5a66c514a493585fa8c0a9a3923f5eebd02607e3f6ee60c77dc5dea69674bc82a31b8bcb348045875a8bc2a2478b9eac50f302e8a93393f6d38bf67acc884543
+MISC ChangeLog 359 SHA256 650d7b2d68d163f8128358fe43533d3aae3dc22a3aaa952a2197d15edce904ea SHA512 810101a86286b8dbd9c25dbf8fa33e8451ddebf9063b1ea6cdce6b13cadf8d434cba5072968f55d3f2f4976aaf1d9014aa82a9d52d691f113a8d7f2dad9b2c32 WHIRLPOOL 3c906a3211cd8147a82835d0b8f3aae2320a6dba053e6b212aa8b108d5190fa57fda41409312f1b76e66a74022fad017a6e9bdf85595869907d7ab70f9bd525e
+MISC metadata.xml 593 SHA256 ae09fff2fcf2da1fd6c0fd922bb9bf0364add81523f39f053105f3c63146a0be SHA512 0fd5d9bcb11762b00e8781edc23111feb9ca30a2ba5873ba52696a338dd878cbc90ce94a010ce825a213583c7b360393c7b843d6e8d80b808098994554c42f71 WHIRLPOOL 0757a917fffec891b5bba3828ba6b0fde5442ea7e49d2bd0eb6cc64330f4aa882ca7656029aeee7552c2269052574f005ba50f6ca65f612e156b4134671359b9

diff --git a/sci-libs/itk/itk-4.4.2.ebuild b/sci-libs/itk/itk-4.4.2.ebuild
new file mode 100644 (file)
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+++ b/sci-libs/itk/itk-4.4.2.ebuild
@@ -0,0 +1,116 @@
+# Copyright 2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_5,2_6,2_7} )
+
+inherit eutils toolchain-funcs cmake-utils python-single-r1
+
+MYP=InsightToolkit-${PV}
+
+DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
+HOMEPAGE="http://www.itk.org"
+SRC_URI="mirror://sourceforge/${PN}/${MYP}.tar.gz"
+
+RESTRICT="primaryuri"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="debug examples fftw itkv3compat python review sse2 test"
+
+RDEPEND="
+       sci-libs/hdf5[cxx]
+       virtual/jpeg
+       media-libs/libpng
+       media-libs/tiff:0
+       sys-libs/zlib
+       fftw? ( sci-libs/fftw:3.0 )
+"
+DEPEND="${RDEPEND}
+       python? ( ${PYTHON_DEPS}
+                         >=dev-lang/swig-2.0
+                         >=dev-cpp/gccxml-0.9.0_pre20120309 )
+"
+
+S="${WORKDIR}/${MYP}"
+
+pkg_pretend() {
+       if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
+               elog "To tune ITK to make the best use ouf working memory you can set"
+               elog "    ITK_COMPUTER_MEMORY_SIZE=XX"
+               elog "in make.conf, default is 1 (unit is GB)"
+       fi
+       if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
+               elog "For Python language bindings, you can define the dimensions"
+               elog "you want to create bindings for by setting"
+               elog "    ITK_WRAP_DIMS=X;Y;Z..."
+               elog "in make.conf, default is 2;3 for 2D and 3D data"
+       fi
+}
+
+src_configure() {
+       local mycmakeargs=(
+               -DWRAP_ITK_JAVA=OFF
+               -DWRAP_ITK_TCL=OFF
+               -DITK_USE_SYSTEM_HDF5=ON
+               -DITK_USE_SYSTEM_JPEG=ON
+               -DITK_USE_SYSTEM_PNG=ON
+               -DITK_USE_SYSTEM_TIFF=ON
+               -DITK_USE_SYSTEM_ZLIB=ON
+               -DITK_USE_SYSTEM_GCCXML=ON
+               -DITK_USE_SYSTEM_SWIG=ON
+               -DITK_BUILD_ALL_MODULES=ON
+               -DBUILD_SHARED_LIBS=ON
+               -DBUILD_EXAMPLES=OFF
+               -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
+               $(cmake-utils_use_build test TESTING)
+               $(cmake-utils_use review ITK_USE_REVIEW)
+               $(cmake-utils_use itkv3compat ITKV3_COMPATIBILITY)
+               $(cmake-utils_use sse2 VNL_CONFIG_ENABLE_SSE2)
+       )
+       if use fftw; then
+               mycmakeargs+=(
+                       -DUSE_FFTWD=ON
+                       -DUSE_FFTWF=ON
+                       -DUSE_SYSTEM_FFTW=ON
+                       -DITK_WRAP_double=ON
+                       -DITK_WRAP_vector_double=ON
+                       -DITK_WRAP_covariant_vector_double=ON
+                       -DITK_WRAP_complex_double=ON
+               )
+       fi
+       if use python; then
+               mycmakeargs+=(
+                       -DITK_WRAP_PYTHON=ON
+                       -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
+               )
+       else
+               mycmakeargs+=(
+                       -DITK_WRAP_PYTHON=OFF
+               )
+       fi
+       cmake-utils_src_configure
+}
+
+src_install() {
+       cmake-utils_src_install
+
+       if use examples; then
+               insinto /usr/share/doc/${PF}/examples
+               docompress -x /usr/share/doc/${PF}/examples
+               doins -r "${S}"/Examples/*
+       fi
+
+       echo "ITK_DATA_ROOT=${EROOT}/usr/share/${PN}/data" > ${T}/40${PN}
+       local ldpath="${EROOT}/usr/$(get_libdir)/InsightToolkit"
+       if use python; then
+               echo "PYTHONPATH=${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> ${T}/40${PN}
+               ldpath="${ldpath}:${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
+       fi
+       echo "LDPATH=${ldpath}" >> ${T}/40${PN}
+
+       doenvd "${T}"/40${PN}
+}

diff --git a/sci-libs/itk/metadata.xml b/sci-libs/itk/metadata.xml
new file mode 100644 (file)
index 0000000..e941d48
--- /dev/null
+++ b/sci-libs/itk/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-biology</herd>
+<maintainer>
+  <email>maintainer-wanted@gentoo.org</email>
+</maintainer>
+<longdescription lang="en">
+  Insight Segmentation and Registration Toolkit (ITK) is a library
+  that provides developers with an extensive suite of tools for image
+  analysis.
+</longdescription>
+<use>
+  <flag name="itkv3compat">Enable compatibility with ITK version 3</flag>
+  <flag name="review">Enable compilation of methods under review</flag>
+</use>
+</pkgmetadata>
+